The 33-year-old appeared in the Athlone Magistrates Court yesterday.
He’s alleged to have beaten the baby to death during a domestic argument last week.
The accused faces intimidation and murder charges.
He’ll make a second court appearance on 2 March for consultation with his legal aid lawyer and for bail information.
The state has indicated it will oppose bail.
Counsellors from Ilitha Labantu, a Gugulethu based organisation that helps abused women and children, attended court proceedings.
The organisation’s Nomaxaba Mqela says they’re providing counselling.