Top seed Djokovic, 28, eased into round three by beating Croatian Borna Coric 6-2 6-4 in an hour and 18 minutes.
The 20-year-old Kyrgios saw off his Swiss rival 7-6 (9-7) 7-6 (6-2).
Last year, he was given a suspended 28-day ban and $25,000 (£17,250) fine after making lewd remarks about Wawrinka's girlfriend during a match.